PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 271aa    MW: 30382 Da    PI: 5.8007
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-26935PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind42.12.3e-1324351101
                   HHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  51 aSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   +SFvRQLn+YgF+k++ e+         weF+++ F +g+++ l++i+r+k
     Sof009246   2 SSFVRQLNTYGFRKIDPEQ---------WEFANEDFIRGERHRLKNIHRRK 43 
                   7**************9998.........*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-11242IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-10242IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-5242IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-10242IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
XSSFVRQLNT YGFRKIDPEQ WEFANEDFIR GERHRLKNIH RRKPIFSHSS HTGSGPLADT  60
ERRDYEEEIE RLKSDNAALT SELENNAQKK LVTEKRMQEL EDKLIFLEDR QKNLMAYVRD  120
IVQAPGLLSS FVQQPDHHGK KRRLQIPISL HQDANTEGNQ IVQGGLTSPP ACRESFDKME  180
SSLNSLENFL REASEAFNIS YDDGLPGPSS AVVITELHSS GESDPHVPSP VSKMHTSSAG  240
AGDSLSSCDV TXSTSFAESL PFLKCSPVQN X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.11e-179hypothetical protein SORBIDRAFT_03g034630
SwissprotQ94J161e-138HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLC5XK401e-179C5XK40_SORBI; Putative uncharacterized protein Sb03g034630
STRINGSb03g034630.11e-179(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-42HSF family protein